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DST Root CA X3 expired on September 30, 2021. Because of this I got invalid certificate error when visiting Directadmin login in Chrome. Certificate itself was valid. CA certificate is problem. What you have to do is update system CA certificates. Also update letsencrypt via custombuild if you didn’t already.

Error was:

[root@server]# /usr/local/directadmin/scripts/letsencrypt.sh renew my.server.com
Setting up certificate for a hostname: my.server.com
2021/09/30 14:49:15 Could not create client: get directory at 'https://acme-v02.api.letsencrypt.org/directory': Get "https://acme-v02.api.letsencrypt.org/directory": x509: certificate signed by unknown authority
Certificate generation failed.

You have to update system CA certificates ( Centos in this case ):

[root@server ~]# yum install ca-certificates -y
....
[root@server ~]# update-ca-trust

Then try to create new certificate for server hostname:

[root@server]# /usr/local/directadmin/scripts/letsencrypt.sh request_single my.server.com 4096
Setting up certificate for a hostname: my.server.com
2021/09/30 14:51:50 [INFO] [my.server.com] acme: Obtaining SAN certificate
2021/09/30 14:51:51 [INFO] [my.server.com] AuthURL: https://acme-v02.api.letsencrypt.org/acme/authz-v3/35702261650
2021/09/30 14:51:51 [INFO] [my.server.com] acme: Could not find solver for: tls-alpn-01
2021/09/30 14:51:51 [INFO] [my.server.com] acme: use http-01 solver
2021/09/30 14:51:51 [INFO] [my.server.com] acme: Trying to solve HTTP-01
2021/09/30 14:51:57 [INFO] [my.server.com] The server validated our request
2021/09/30 14:51:57 [INFO] [my.server.com] acme: Validations succeeded; requesting certificates
2021/09/30 14:52:01 [INFO] [my.server.com] Server responded with a certificate.
Certificate for my.server.com has been created successfully!
DirectAdmin certificate has been setup.
...